The Tutorial Data SetΒΆ
We have prepared a small toy data set for this tutorial. Please use the following commands to download the data to your VM:
sudo chown ubuntu:ubuntu /mnt
cd /mnt
wget https://openstack.cebitec.uni-bielefeld.de:8080/swift/v1/denbi-mg-course/WGS-data.tar
tar xvf WGS-data.tar
The /mnt/WGS-data directory has the following content:
| File | Content |
|---|---|
| genomes/ | Directory containing the reference genomes |
| gold_std/ | Gold Standard assemblies |
| read1.fq | Read 1 of paired reads (FASTQ) |
| read2.fq | Read 2 of paired reads (FASTQ) |
| reads.fas | Shuffled reads (FASTA) |